STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCB33472.1Lysophospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology. (282 aa)    
Predicted Functional Partners:
OCB33473.1
Phosphohistidine phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.982
mnmA
tRNA 2-thiouridine(34) synthase MnmA; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.817
OCB33471.1
Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.817
OCB33477.1
Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.572
OCB39747.1
CDP-diacylglycerol--serine O-phosphatidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
  
 0.539
OCB31001.1
Fatty acyl-AMP ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.529
OCB33503.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.523
OCB38417.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.523
OCB32478.1
Phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.519
OCB33474.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.514
Your Current Organism:
Mycobacterium malmoense
NCBI taxonomy Id: 1780
Other names: ATCC 29571, CCUG 37761, CIP 105775, DSM 44163, JCM 13391, M. malmoense, NCTC 11298
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.