Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
OCB33497.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)    
Predicted Functional Partners:
OCB33489.1
Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.881
OCB33490.1
Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.880
OCB33491.1
Lycopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.863
OCB33492.1
Lycopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.863
OCB33493.1
Ubiquinone biosynthesis methyltransferase UbiE; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.863
OCB33494.1
Isorenieratene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.863
OCB33495.1
2Fe-2S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.863
OCB33488.1
Polyprenyl synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.814
OCB32241.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.626
OCB32236.1
Carboxylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the type-B carboxylesterase/lipase family.
       0.470
Your Current Organism:
Mycobacterium malmoense
NCBI taxonomy Id: 1780
Other names: ATCC 29571, CCUG 37761, CIP 105775, DSM 44163, JCM 13391, M. malmoense, NCTC 11298
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