STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCB32227.1AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa)    
Predicted Functional Partners:
OCB32228.1
MorD protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.977
OCB36820.1
Nitric oxide reductase activation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.828
OCB38712.1
Amino acid decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.634
OCB32226.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.593
OCB32225.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.456
OCB37331.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.456
OCB32297.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.432
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
    
 0.417
Your Current Organism:
Mycobacterium malmoense
NCBI taxonomy Id: 1780
Other names: ATCC 29571, CCUG 37761, CIP 105775, DSM 44163, JCM 13391, M. malmoense, NCTC 11298
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