STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCB31724.1Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (375 aa)    
Predicted Functional Partners:
OCB31727.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.913
OCB31725.1
Sulfotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.895
OCB31726.1
Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.883
OCB39467.1
LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.762
OCB31728.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.727
OCB31729.1
LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.711
OCB35258.1
LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.708
OCB36675.1
Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.698
OCB38154.1
Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.693
OCB36354.1
Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.689
Your Current Organism:
Mycobacterium malmoense
NCBI taxonomy Id: 1780
Other names: ATCC 29571, CCUG 37761, CIP 105775, DSM 44163, JCM 13391, M. malmoense, NCTC 11298
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