STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCB31221.1GMC oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (531 aa)    
Predicted Functional Partners:
OCB36485.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.871
OCB40366.1
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.770
OCB40495.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.741
OCB36569.1
Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.724
OCB31223.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.695
OCB38556.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.695
OCB31222.1
Carnitine dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.689
OCB32622.1
Sulfotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.664
OCB32151.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.664
OCB31725.1
Sulfotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.664
Your Current Organism:
Mycobacterium malmoense
NCBI taxonomy Id: 1780
Other names: ATCC 29571, CCUG 37761, CIP 105775, DSM 44163, JCM 13391, M. malmoense, NCTC 11298
Server load: medium (68%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.