OCB41247.1 protein (Mycobacterium malmoense)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

OCB41247.1

Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (351 aa)

Predicted Functional Partners:

OCB41244.1

0.987

OCB41245.1

0.987

OCB41248.1

0.985

OCB41246.1

0.963

OCB41249.1

0.962

OCB41250.1

0.960

OCB41242.1

0.942

OCB36086.1

0.906

OCB35503.1

0.906

OCB32643.1

0.905

Your Current Organism:

Mycobacterium malmoense

NCBI taxonomy Id: 1780
Other names: ATCC 29571, CCUG 37761, CIP 105775, DSM 44163, JCM 13391, M. malmoense, NCTC 11298

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OCB32643.1	OCB41244.1	A5676_05095	A5676_09120	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.839
OCB32643.1	OCB41245.1	A5676_05095	A5676_09125	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.878
OCB32643.1	OCB41246.1	A5676_05095	A5676_09130	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901
OCB32643.1	OCB41247.1	A5676_05095	A5676_09135	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
OCB32643.1	OCB41248.1	A5676_05095	A5676_09140	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.697
OCB32643.1	OCB41249.1	A5676_05095	A5676_09145	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.816
OCB32643.1	OCB41250.1	A5676_05095	A5676_09150	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.433
OCB35503.1	OCB41244.1	A5676_23810	A5676_09120	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.842
OCB35503.1	OCB41245.1	A5676_23810	A5676_09125	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.880
OCB35503.1	OCB41246.1	A5676_23810	A5676_09130	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
OCB35503.1	OCB41247.1	A5676_23810	A5676_09135	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
OCB35503.1	OCB41248.1	A5676_23810	A5676_09140	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.696
OCB35503.1	OCB41249.1	A5676_23810	A5676_09145	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.820
OCB35503.1	OCB41250.1	A5676_23810	A5676_09150	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
OCB36086.1	OCB41244.1	A5676_22335	A5676_09120	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.844
OCB36086.1	OCB41245.1	A5676_22335	A5676_09125	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.879
OCB36086.1	OCB41246.1	A5676_22335	A5676_09130	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
OCB36086.1	OCB41247.1	A5676_22335	A5676_09135	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
OCB36086.1	OCB41248.1	A5676_22335	A5676_09140	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.697
OCB36086.1	OCB41249.1	A5676_22335	A5676_09145	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.819

page 1 of 5

Server load: medium (44%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About