STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCB41121.1Tautomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (130 aa)    
Predicted Functional Partners:
OCB41122.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.816
OCB41123.1
4-carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.583
OCB41120.1
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.564
OCB41124.1
Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.493
OCB41127.1
Amino acid oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.489
OCB41125.1
Polyketide cyclase / dehydrase and lipid transport; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.483
OCB35231.1
Exopolyphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.462
OCB40145.1
4-amino-4-deoxychorismate lyase; Catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.432
OCB40858.1
Branched-chain amino acid aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.432
OCB32908.1
2,3-dihydroxybiphenyl 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.430
Your Current Organism:
Mycobacterium malmoense
NCBI taxonomy Id: 1780
Other names: ATCC 29571, CCUG 37761, CIP 105775, DSM 44163, JCM 13391, M. malmoense, NCTC 11298
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.