Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
OCB40740.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (98 aa)    
Predicted Functional Partners:
OCB40739.1
AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.948
OCB40734.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.778
A5676_00645
Hydroxyacid dehydrogenase; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.744
OCB36118.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.740
OCB38141.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.736
OCB36070.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.731
OCB31225.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.714
OCB37092.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.711
OCB32158.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.710
OCB40750.1
acyl-CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CoA-transferase III family.
 
     0.701
Your Current Organism:
Mycobacterium malmoense
NCBI taxonomy Id: 1780
Other names: ATCC 29571, CCUG 37761, CIP 105775, DSM 44163, JCM 13391, M. malmoense, NCTC 11298
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