STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCB40044.1Chloride ion channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (416 aa)    
Predicted Functional Partners:
OCB40043.1
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.854
OCB40042.1
Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.784
OCB38257.1
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.649
OCB39668.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.539
OCB36596.1
Sodium:alanine symporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.538
OCB36642.1
Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.495
OCB40077.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.477
OCB38544.1
Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.446
OCB35009.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.418
OCB35010.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.418
Your Current Organism:
Mycobacterium malmoense
NCBI taxonomy Id: 1780
Other names: ATCC 29571, CCUG 37761, CIP 105775, DSM 44163, JCM 13391, M. malmoense, NCTC 11298
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.