STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCB39472.1Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (357 aa)    
Predicted Functional Partners:
OCB39469.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.815
OCB39468.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.797
OCB39471.1
AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.777
OCB39470.1
Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
OCB31724.1
Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.564
OCB39474.1
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.552
OCB39473.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.544
OCB39486.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.544
OCB37984.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.543
OCB37987.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.543
Your Current Organism:
Mycobacterium malmoense
NCBI taxonomy Id: 1780
Other names: ATCC 29571, CCUG 37761, CIP 105775, DSM 44163, JCM 13391, M. malmoense, NCTC 11298
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.