Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
OCB38235.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (124 aa)    
Predicted Functional Partners:
tyrS
tyrosine--tRNA ligase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.
       0.666
OCB38236.1
HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.589
OCB38271.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.587
OCB38237.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.564
nadK
NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
       0.563
OCB38238.1
16S/23S rRNA (cytidine-2'-O)-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.562
OCB38240.1
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
       0.518
OCB35805.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.465
OCB39714.1
Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.435
OCB38233.1
Bile acid:sodium symporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.433
Your Current Organism:
Mycobacterium malmoense
NCBI taxonomy Id: 1780
Other names: ATCC 29571, CCUG 37761, CIP 105775, DSM 44163, JCM 13391, M. malmoense, NCTC 11298
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