STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCB37249.1Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (521 aa)    
Predicted Functional Partners:
OCB38000.1
Maltokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.994
OCB37282.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.933
OCB38045.1
Trehalose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 
0.888
OCB35056.1
Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.886
OCB36903.1
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 
0.871
OCB35266.1
Ribokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.865
OCB37448.1
Glycogen debranching enzyme GlgX; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family.
 
 0.851
OCB38351.1
Glycogen debranching enzyme GlgX; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family.
 
 
0.838
OCB32654.1
Trehalose-6-phosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.836
OCB38115.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.834
Your Current Organism:
Mycobacterium malmoense
NCBI taxonomy Id: 1780
Other names: ATCC 29571, CCUG 37761, CIP 105775, DSM 44163, JCM 13391, M. malmoense, NCTC 11298
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.