Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OCB36306.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)    
Predicted Functional Partners:
OCB36305.1
FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.657
OCB36307.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.634
OCB31405.1
Type VII secretion integral membrane protein EccD; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.597
OCB35473.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.591
OCB36642.1
Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.571
lig
ATP-dependent DNA ligase; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.
  
     0.569
OCB36293.1
IF2 family translation initiation factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.565
OCB38476.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.563
OCB38555.1
Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.512
OCB38372.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.505
Your Current Organism:
Mycobacterium malmoense
NCBI taxonomy Id: 1780
Other names: ATCC 29571, CCUG 37761, CIP 105775, DSM 44163, JCM 13391, M. malmoense, NCTC 11298
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