STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WN55_09593Uncharacterized protein C9orf78. (247 aa)    
Predicted Functional Partners:
WN55_09527
Pre-mRNA-processing-splicing factor 8.
    
 
 0.912
WN55_06120
Pre-mRNA-splicing factor SLU7.
   
 
 0.839
WN55_10954
Mediator of RNA polymerase II transcription subunit 22.
   
  
 0.825
WN55_02304
Pre-mRNA-splicing factor 38A.
   
  
 0.779
WN55_10247
Protein FAM50 like protein.
    
  0.766
MED18
Mediator of RNA polymerase II transcription subunit 18; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
   
    0.751
WN55_02463
Prefoldin subunit 6.
   
    0.751
WN55_04752
Pre-mRNA-splicing factor Syf2.
   
 
 0.726
WN55_00397
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.724
WN55_01615
Superkiller viralicidic activity 2-like 2.
    
  0.723
Your Current Organism:
Dufourea novaeangliae
NCBI taxonomy Id: 178035
Other names: D. novaeangliae, Dufourea nova-angliae
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