WN55_10226 protein (Dufourea novaeangliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

WN55_10226

SPRY domain-containing SOCS box protein 3. (267 aa)

Predicted Functional Partners:

WN55_11597

0.859

WN55_03542

0.808

WN55_03565

0.802

WN55_03688

0.731

WN55_06936

0.731

WN55_03036

0.675

WN55_08248

0.654

WN55_09320

0.652

WN55_09314

0.652

WN55_02924

0.640

Your Current Organism:

Dufourea novaeangliae

NCBI taxonomy Id: 178035
Other names: D. novaeangliae, Dufourea nova-angliae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
WN55_02924	WN55_03036	A0A154PIK3	A0A154PI44	Suppressor of cytokine signaling 2.	SPRY domain-containing SOCS box protein 1.	0.636
WN55_02924	WN55_03542	A0A154PIK3	A0A154PIQ3	Suppressor of cytokine signaling 2.	Cullin-5; Belongs to the cullin family.	0.922
WN55_02924	WN55_03565	A0A154PIK3	A0A154PIR9	Suppressor of cytokine signaling 2.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.566
WN55_02924	WN55_03688	A0A154PIK3	A0A154PJ18	Suppressor of cytokine signaling 2.	Cullin-1; Belongs to the cullin family.	0.571
WN55_02924	WN55_06936	A0A154PIK3	A0A154PRC3	Suppressor of cytokine signaling 2.	Cullin-3-A; Belongs to the cullin family.	0.567
WN55_02924	WN55_08248	A0A154PIK3	A0A154P6I4	Suppressor of cytokine signaling 2.	RING-box protein 1A.	0.726
WN55_02924	WN55_10226	A0A154PIK3	A0A154P396	Suppressor of cytokine signaling 2.	SPRY domain-containing SOCS box protein 3.	0.640
WN55_02924	WN55_11597	A0A154PIK3	A0A154PBC5	Suppressor of cytokine signaling 2.	Transcription elongation factor B polypeptide 1; Belongs to the SKP1 family.	0.926
WN55_03036	WN55_02924	A0A154PI44	A0A154PIK3	SPRY domain-containing SOCS box protein 1.	Suppressor of cytokine signaling 2.	0.636
WN55_03036	WN55_03542	A0A154PI44	A0A154PIQ3	SPRY domain-containing SOCS box protein 1.	Cullin-5; Belongs to the cullin family.	0.841
WN55_03036	WN55_03565	A0A154PI44	A0A154PIR9	SPRY domain-containing SOCS box protein 1.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.802
WN55_03036	WN55_03688	A0A154PI44	A0A154PJ18	SPRY domain-containing SOCS box protein 1.	Cullin-1; Belongs to the cullin family.	0.761
WN55_03036	WN55_06936	A0A154PI44	A0A154PRC3	SPRY domain-containing SOCS box protein 1.	Cullin-3-A; Belongs to the cullin family.	0.738
WN55_03036	WN55_08248	A0A154PI44	A0A154P6I4	SPRY domain-containing SOCS box protein 1.	RING-box protein 1A.	0.657
WN55_03036	WN55_09314	A0A154PI44	A0A154PB42	SPRY domain-containing SOCS box protein 1.	Putative E3 ubiquitin-protein ligase MYCBP2.	0.652
WN55_03036	WN55_09320	A0A154PI44	A0A154P904	SPRY domain-containing SOCS box protein 1.	Putative E3 ubiquitin-protein ligase MYCBP2.	0.652
WN55_03036	WN55_10226	A0A154PI44	A0A154P396	SPRY domain-containing SOCS box protein 1.	SPRY domain-containing SOCS box protein 3.	0.675
WN55_03036	WN55_11597	A0A154PI44	A0A154PBC5	SPRY domain-containing SOCS box protein 1.	Transcription elongation factor B polypeptide 1; Belongs to the SKP1 family.	0.969
WN55_03542	WN55_02924	A0A154PIQ3	A0A154PIK3	Cullin-5; Belongs to the cullin family.	Suppressor of cytokine signaling 2.	0.922
WN55_03542	WN55_03036	A0A154PIQ3	A0A154PI44	Cullin-5; Belongs to the cullin family.	SPRY domain-containing SOCS box protein 1.	0.841