STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WN55_09165Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (228 aa)    
Predicted Functional Partners:
WN55_09788
Cleavage and polyadenylation specificity factor subunit 4.
    
 0.992
WN55_08645
Pre-mRNA 3'-end-processing factor FIP1.
   
 0.983
WN55_06513
Putative ATP-dependent RNA helicase YTHDC2.
   
 0.967
WN55_02792
Pre-mRNA cleavage complex 2 protein Pcf11.
    
 0.933
WN55_07590
YTH domain-containing protein 1.
    
 
 0.929
WN55_11192
Cleavage stimulation factor subunit 2.
   
 0.926
WN55_02600
Cleavage and polyadenylation specificity factor subunit 2.
   
 
 0.904
WN55_10739
Cleavage stimulation factor subunit 1.
     
 0.902
WN55_01444
Protein suppressor of forked.
   
 
 0.858
WN55_10861
Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.
   
 0.855
Your Current Organism:
Dufourea novaeangliae
NCBI taxonomy Id: 178035
Other names: D. novaeangliae, Dufourea nova-angliae
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