STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
WN55_11081Facilitated trehalose transporter Tret1; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. (428 aa)    
Predicted Functional Partners:
WN55_08361
AP-2 complex subunit beta.
    
  0.499
WN55_11567
ATP-dependent RNA helicase Ddx1.
    
 0.485
WN55_05613
RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs; Belongs to the RtcB family.
    
  0.456
WN55_06519
Ubiquilin-1.
    
  0.449
WN55_06787
AP-2 complex subunit alpha; Adaptins are components of the adapter complexes which link clathrin to receptors in coated vesicles.
    
  0.445
WN55_04776
Synaptobrevin.
    
  0.443
WN55_01858
AP-2 complex subunit mu; Belongs to the adaptor complexes medium subunit family.
     
  0.438
WN55_11089
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
     
  0.431
WN55_07537
Vesicular acetylcholine transporter.
     
  0.412
WN55_02970
Phosphatidylinositol-binding clathrin assembly protein LAP.
     
  0.412
Your Current Organism:
Dufourea novaeangliae
NCBI taxonomy Id: 178035
Other names: D. novaeangliae, Dufourea nova-angliae
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