STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WN55_02206Heterogeneous nuclear ribonucleoprotein H2. (150 aa)    
Predicted Functional Partners:
WN55_02205
Heterogeneous nuclear ribonucleoprotein F.
 
    
0.913
WN55_11044
Heterogeneous nuclear ribonucleoprotein A1, A2/B1 like protein.
   
 0.842
WN55_03657
Heterogeneous nuclear ribonucleoprotein U-like protein 1.
   
 0.800
WN55_01167
Myelin expression factor 2.
   
 0.798
WN55_05500
Serine/arginine-rich splicing factor 1.
   
 0.754
WN55_03854
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requ [...]
   
 0.752
WN55_09313
RING finger and SPRY domain-containing protein 1.
   
 0.745
WN55_04918
Transformer-2 protein like protein beta.
   
 0.745
WN55_05212
Heterogeneous nuclear ribonucleoprotein K.
   
 0.744
WN55_05216
Heterogeneous nuclear ribonucleoprotein K.
   
 0.744
Your Current Organism:
Dufourea novaeangliae
NCBI taxonomy Id: 178035
Other names: D. novaeangliae, Dufourea nova-angliae
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