STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WN55_05739Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. (492 aa)    
Predicted Functional Partners:
WN55_04818
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
 
 
 0.997
WN55_02351
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
 
 
 0.989
WN55_05980
Uncharacterized protein.
  
 
 0.975
WN55_01791
Coproporphyrinogen-III oxidase.
  
 
 0.971
WN55_01772
NADH dehydrogenase (Ubiquinone) complex I, assembly factor 6.
    
 0.866
WN55_10175
Uroporphyrinogen-III synthase.
  
 
 0.846
WN55_06323
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
    
  0.818
WN55_07465
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
    
  0.818
WN55_00255
Lysine-specific histone demethylase 1A.
  
 
 0.758
WN55_00252
Lysine-specific histone demethylase 1A.
  
 
 0.758
Your Current Organism:
Dufourea novaeangliae
NCBI taxonomy Id: 178035
Other names: D. novaeangliae, Dufourea nova-angliae
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