WN55_05543 protein (Dufourea novaeangliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

WN55_05543

Ras-related protein Rab-5C. (214 aa)

Predicted Functional Partners:

WN55_01770

0.999

WN55_00927

0.998

WN55_09369

0.986

WN55_03567

0.982

WN55_06956

0.979

WN55_01161

0.976

WN55_05650

0.940

WN55_08113

0.931

WN55_11508

0.910

WN55_09951

0.898

Your Current Organism:

Dufourea novaeangliae

NCBI taxonomy Id: 178035
Other names: D. novaeangliae, Dufourea nova-angliae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
WN55_00927	WN55_01161	A0A154PBG7	A0A154PFT4	Cyclin-G-associated kinase.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.907
WN55_00927	WN55_01770	A0A154PBG7	A0A154NVY4	Cyclin-G-associated kinase.	Rab5 GDP/GTP exchange factor.	0.747
WN55_00927	WN55_05543	A0A154PBG7	A0A154PPM4	Cyclin-G-associated kinase.	Ras-related protein Rab-5C.	0.998
WN55_00927	WN55_05650	A0A154PBG7	A0A154PND0	Cyclin-G-associated kinase.	GTPase-activating protein and VPS9 domain-containing protein 1.	0.634
WN55_00927	WN55_08113	A0A154PBG7	A0A154PSR8	Cyclin-G-associated kinase.	Alsin.	0.459
WN55_00927	WN55_09951	A0A154PBG7	A0A154P7K0	Cyclin-G-associated kinase.	Ankyrin repeat and FYVE domain-containing protein 1.	0.705
WN55_01161	WN55_00927	A0A154PFT4	A0A154PBG7	Phosphatidylinositol 3-kinase catalytic subunit type 3.	Cyclin-G-associated kinase.	0.907
WN55_01161	WN55_01770	A0A154PFT4	A0A154NVY4	Phosphatidylinositol 3-kinase catalytic subunit type 3.	Rab5 GDP/GTP exchange factor.	0.475
WN55_01161	WN55_05543	A0A154PFT4	A0A154PPM4	Phosphatidylinositol 3-kinase catalytic subunit type 3.	Ras-related protein Rab-5C.	0.976
WN55_01161	WN55_08113	A0A154PFT4	A0A154PSR8	Phosphatidylinositol 3-kinase catalytic subunit type 3.	Alsin.	0.400
WN55_01161	WN55_09369	A0A154PFT4	A0A154PTB7	Phosphatidylinositol 3-kinase catalytic subunit type 3.	Rabenosyn-5.	0.794
WN55_01161	WN55_11508	A0A154PFT4	A0A154PAW8	Phosphatidylinositol 3-kinase catalytic subunit type 3.	Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.	0.452
WN55_01770	WN55_00927	A0A154NVY4	A0A154PBG7	Rab5 GDP/GTP exchange factor.	Cyclin-G-associated kinase.	0.747
WN55_01770	WN55_01161	A0A154NVY4	A0A154PFT4	Rab5 GDP/GTP exchange factor.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.475
WN55_01770	WN55_03567	A0A154NVY4	A0A154PIT4	Rab5 GDP/GTP exchange factor.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.999
WN55_01770	WN55_05543	A0A154NVY4	A0A154PPM4	Rab5 GDP/GTP exchange factor.	Ras-related protein Rab-5C.	0.999
WN55_01770	WN55_05650	A0A154NVY4	A0A154PND0	Rab5 GDP/GTP exchange factor.	GTPase-activating protein and VPS9 domain-containing protein 1.	0.646
WN55_01770	WN55_06956	A0A154NVY4	A0A154PRE5	Rab5 GDP/GTP exchange factor.	Rab GTPase-binding effector protein 1.	0.999
WN55_01770	WN55_08113	A0A154NVY4	A0A154PSR8	Rab5 GDP/GTP exchange factor.	Alsin.	0.999
WN55_01770	WN55_09369	A0A154NVY4	A0A154PTB7	Rab5 GDP/GTP exchange factor.	Rabenosyn-5.	0.623