STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WN55_07357Actin-related protein 6; Belongs to the actin family. (295 aa)    
Predicted Functional Partners:
WN55_01812
Zinc finger HIT domain-containing protein 1.
   
 
 0.992
WN55_03018
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.
    
 
 0.990
WN55_10757
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.
    
 
 0.983
WN55_11336
Vacuolar protein sorting-associated protein 72 like protein.
    
 
 0.947
WN55_01864
Splicing factor 3B subunit 4.
 
  
   0.859
WN55_04377
DNA methyltransferase 1-associated protein 1.
    
 
 0.859
WN55_07387
YEATS domain-containing protein 4.
   
 
 0.806
WN55_04368
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
   
   0.798
WN55_03216
Craniofacial development protein 1.
   
 
 0.720
WN55_09650
Histone H2B; Belongs to the histone H2B family.
   
   0.576
Your Current Organism:
Dufourea novaeangliae
NCBI taxonomy Id: 178035
Other names: D. novaeangliae, Dufourea nova-angliae
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