STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVH75407.1Integrase core domain protein. (253 aa)    
Predicted Functional Partners:
CVH75669.1
Hypothetical protein.
 
     0.975
CVH74609.1
Hypothetical protein.
 
     0.960
CVH74611.1
Transposase.
 
    0.787
CVH75666.1
transposase/IS protein.
 
    0.787
CVH75671.1
transposase/IS protein.
 
    0.787
CVH74610.1
Hypothetical protein.
 
     0.766
xerD_4
Tyrosine recombinase XerD.
 
     0.573
CVH75406.1
Hypothetical protein.
 
    
0.567
xerD_3
Tyrosine recombinase XerD.
 
     0.560
CVH75405.1
Hypothetical protein.
       0.431
Your Current Organism:
Clostridiales bacterium CHKCI006
NCBI taxonomy Id: 1780379
Other names: C. bacterium CHKCI006
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.