STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVH78954.1Hypothetical protein. (167 aa)    
Predicted Functional Partners:
irtA_5
Iron import ATP-binding/permease protein IrtA.
 
     0.875
CVH78952.1
Putative multidrug export ATP-binding/permease protein.
 
     0.874
irtA_4
Iron import ATP-binding/permease protein IrtA.
  
     0.672
CVH77534.1
Putative multidrug export ATP-binding/permease protein.
  
     0.663
CVH74358.1
Putative ABC transporter ATP-binding protein.
  
     0.613
irtA_1
Iron import ATP-binding/permease protein IrtA.
 
     0.599
irtA_3
Iron import ATP-binding/permease protein IrtA.
 
     0.555
msbA_4
Lipid A export ATP-binding/permease protein MsbA.
  
     0.552
CVH74289.1
NADH oxidase.
  
 
 0.542
CVH76246.1
NADH oxidase.
  
 
 0.542
Your Current Organism:
Clostridiales bacterium CHKCI006
NCBI taxonomy Id: 1780379
Other names: C. bacterium CHKCI006
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.