STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVI65899.1RNA polymerase sigma factor SigX. (142 aa)    
Predicted Functional Partners:
CVI65902.1
Helix-turn-helix domain protein.
 
     0.947
CVI69717.1
Helix-turn-helix domain protein.
 
    0.781
CVI74080.1
Helix-turn-helix domain protein.
 
    0.781
CVI74133.1
Helix-turn-helix domain protein.
 
    0.779
CVI69543.1
Helix-turn-helix domain protein.
 
    0.759
CVI69546.1
Excisionase from transposon Tn916.
  
     0.654
Int-Tn_6
Transposase from transposon Tn916; Belongs to the 'phage' integrase family.
  
     0.652
CVI73402.1
Hypothetical protein.
  
   0.582
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.565
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.548
Your Current Organism:
Eubacteriaceae bacterium CHKCI004
NCBI taxonomy Id: 1780380
Other names: E. bacterium CHKCI004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.