STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
liaSSensor histidine kinase LiaS. (443 aa)    
Predicted Functional Partners:
degU
Transcriptional regulatory protein DegU.
 0.998
liaR
Transcriptional regulatory protein LiaR.
 
 0.946
araN
Putative arabinose-binding protein precursor.
 
  
 0.941
rpfC
Sensory/regulatory protein RpfC.
  
 0.920
CVI71711.1
Hypothetical protein.
  
 0.865
tcrX
Putative transcriptional regulatory protein TcrX.
  
 0.865
rbsB_1
D-ribose-binding periplasmic protein precursor.
 
    0.856
luxQ
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
 
 0.847
arcB
Aerobic respiration control sensor protein ArcB.
 
 
 0.843
CVI68707.1
DNA-binding transcriptional activator PspC.
  
  
 0.757
Your Current Organism:
Eubacteriaceae bacterium CHKCI004
NCBI taxonomy Id: 1780380
Other names: E. bacterium CHKCI004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.