STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVI68200.1Putative HTH-type transcriptional regulator. (138 aa)    
Predicted Functional Partners:
CVI68197.1
Hypothetical protein.
 
    0.947
CVI68192.1
Hypothetical protein.
       0.773
CVI68194.1
Hypothetical protein.
       0.773
lysC
Aspartokinase; Belongs to the aspartokinase family.
  
  
  0.537
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
     
 0.498
CVI68203.1
Helix-turn-helix domain protein.
      
0.483
pheA_1
P-protein.
    
  0.472
pheA_2
P-protein.
    
  0.472
gloB
Hydroxyacylglutathione hydrolase.
   
 
  0.470
CVI72759.1
Putative metallo-hydrolase.
   
 
  0.470
Your Current Organism:
Eubacteriaceae bacterium CHKCI004
NCBI taxonomy Id: 1780380
Other names: E. bacterium CHKCI004
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.