STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVI68635.1Transcriptional activator FtrA. (258 aa)    
Predicted Functional Partners:
nifJ
Pyruvate-flavodoxin oxidoreductase.
     
 0.838
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.554
nrgB
Nitrogen regulatory PII-like protein; Belongs to the P(II) protein family.
       0.548
CVI68638.1
Ornithine cyclodeaminase.
       0.547
araC_2
Arabinose operon regulatory protein.
  
 
   0.534
CVI68655.1
D-alanyl-D-alanine carboxypeptidase precursor.
 
     0.532
adaA
Bifunctional transcriptional activator/DNA repair enzyme AdaA.
  
 
   0.518
CVI67678.1
DNA-binding transcriptional regulator SoxS.
  
     0.501
carA
Carbamoyl-phosphate synthase small chain; Belongs to the CarA family.
    
  0.471
soxS
Regulatory protein SoxS.
  
     0.466
Your Current Organism:
Eubacteriaceae bacterium CHKCI004
NCBI taxonomy Id: 1780380
Other names: E. bacterium CHKCI004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.