STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVI69786.1Hypothetical protein. (94 aa)    
Predicted Functional Partners:
ymdB_3
O-acetyl-ADP-ribose deacetylase.
     0.926
ymdB_1
O-acetyl-ADP-ribose deacetylase.
 
      0.900
CVI69785.1
Hypothetical protein.
 
     0.880
CVI67535.1
2',5' RNA ligase family.
  
     0.758
ymdB_2
O-acetyl-ADP-ribose deacetylase.
 
      0.600
CVI68446.1
RNA polymerase factor sigma-70; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.533
CVI68440.1
RNA polymerase factor sigma-70; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.518
CVI73468.1
RNA polymerase factor sigma-70; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.416
Your Current Organism:
Eubacteriaceae bacterium CHKCI004
NCBI taxonomy Id: 1780380
Other names: E. bacterium CHKCI004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.