STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycjOInner membrane ABC transporter permease protein YcjO. (282 aa)    
Predicted Functional Partners:
araQ_2
L-arabinose transport system permease protein AraQ.
 0.999
sugC
Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.
 
 0.997
CVI70178.1
Bacterial extracellular solute-binding protein.
 
 0.997
araQ_1
L-arabinose transport system permease protein AraQ.
 
 0.995
potA_1
Spermidine/putrescine import ATP-binding protein PotA.
 
 0.989
CVI67293.1
Maltose ABC transporter periplasmic protein.
 
 0.977
CVI70169.1
Macrolide transporter subunit MacA.
 
 
  0.953
araN
Putative arabinose-binding protein precursor.
 
 0.930
CVI71361.1
FHA domain protein.
     
 0.819
mglA
Galactose/methyl galactoside import ATP-binding protein MglA.
   
 
 0.809
Your Current Organism:
Eubacteriaceae bacterium CHKCI004
NCBI taxonomy Id: 1780380
Other names: E. bacterium CHKCI004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.