STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ytrA_5HTH-type transcriptional repressor YtrA. (125 aa)    
Predicted Functional Partners:
ytrB_3
ABC transporter ATP-binding protein YtrB.
    0.944
CVI70494.1
Hypothetical protein.
  
    0.761
skfE_2
SkfA peptide export ATP-binding protein SkfE.
    0.740
yxlF_1
Putative ABC transporter ATP-binding protein YxlF.
    0.731
ytrB_2
ABC transporter ATP-binding protein YtrB.
    0.589
CVI70496.1
Hypothetical protein.
       0.562
CVI68994.1
Hypothetical protein.
  
  
 0.432
CVI70489.1
Bacterial regulatory proteins, tetR family.
  
    0.420
Your Current Organism:
Eubacteriaceae bacterium CHKCI004
NCBI taxonomy Id: 1780380
Other names: E. bacterium CHKCI004
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.