STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVI71361.1FHA domain protein. (247 aa)    
Predicted Functional Partners:
CVI70370.1
Photosystem I assembly protein Ycf3.
  
 0.966
rpfC
Sensory/regulatory protein RpfC.
  
 0.881
pyk_3
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
  0.863
sbcC
Nuclease SbcCD subunit C.
   
 0.836
glgB_1
1,4-alpha-glucan branching enzyme GlgB; Belongs to the glycosyl hydrolase 13 family.
  
 
  0.831
glgB_2
1,4-alpha-glucan branching enzyme GlgB; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
 
  0.831
glgB_3
1,4-alpha-glucan branching enzyme GlgB; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position. Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
 
  0.831
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
 0.830
ftsW_3
Lipid II flippase FtsW; Belongs to the SEDS family.
     
 0.827
araQ_1
L-arabinose transport system permease protein AraQ.
     
 0.826
Your Current Organism:
Eubacteriaceae bacterium CHKCI004
NCBI taxonomy Id: 1780380
Other names: E. bacterium CHKCI004
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