STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoIVAStage IV sporulation protein A. (489 aa)    
Predicted Functional Partners:
CVI69808.1
Hypothetical protein.
  
  
 0.899
lytB
Amidase enhancer precursor.
  
  
 0.890
spoIIID
Stage III sporulation protein D.
  
  
 0.884
CVI73092.1
Stage II sporulation protein P (SpoIIP).
 
   
 0.862
CVI69799.1
Stage III sporulation protein AC/AD protein family protein.
  
    0.857
CVI66570.1
Stage II sporulation protein R (spore_II_R).
  
   
 0.856
CVI69790.1
Hypothetical protein.
  
  
 0.854
spoIIAB
Anti-sigma F factor.
  
  
 0.846
spoIIAA
Anti-sigma F factor antagonist; Belongs to the anti-sigma-factor antagonist family.
  
   
 0.840
spo0A_1
Stage 0 sporulation protein A.
  
   
 0.839
Your Current Organism:
Eubacteriaceae bacterium CHKCI004
NCBI taxonomy Id: 1780380
Other names: E. bacterium CHKCI004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.