STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prkC_2Serine/threonine-protein kinase PrkC. (607 aa)    
Predicted Functional Partners:
CVI65654.1
Photosystem I assembly protein Ycf3.
  
 0.894
stp_2
Serine/threonine phosphatase stp.
 
  0.859
CVI72072.1
Hypothetical protein.
 
    0.833
stp_1
Serine/threonine phosphatase stp.
  
  0.818
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
 0.756
rpfC
Sensory/regulatory protein RpfC.
    
 0.753
embR
Transcriptional regulatory protein EmbR.
 
 
   0.702
pyk_3
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
 
  0.686
eccCa1
ESX-1 secretion system protein EccCa1.
 
 
 
 0.673
CVI71361.1
FHA domain protein.
  
 
 0.637
Your Current Organism:
Eubacteriaceae bacterium CHKCI004
NCBI taxonomy Id: 1780380
Other names: E. bacterium CHKCI004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.