STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpfG_1Cyclic di-GMP phosphodiesterase response regulator RpfG. (197 aa)    
Predicted Functional Partners:
hemZ
Oxygen-independent coproporphyrinogen-III oxidase 2.
      0.937
cph2_3
Phytochrome-like protein cph2.
 
 
 0.821
yeaJ
Putative diguanylate cyclase YeaJ.
  
 0.809
cph2_1
Phytochrome-like protein cph2.
 
 0.803
cph2_2
Phytochrome-like protein cph2.
 
 0.800
pyk_3
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
  0.767
gmr
Cyclic di-GMP phosphodiesterase Gmr.
  
  
 0.758
metH_2
Methionine synthase.
     
 0.739
aspS_2
Aspartate--tRNA ligase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
   
   0.704
CVI72759.1
Putative metallo-hydrolase.
       0.703
Your Current Organism:
Eubacteriaceae bacterium CHKCI004
NCBI taxonomy Id: 1780380
Other names: E. bacterium CHKCI004
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