OEJ75642.1 protein (Desertifilum sp. IPPASB1220)

Nodes:

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second shell of interactors

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a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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[Homology]

Score

OEJ75642.1

KAP family P-loop domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (446 aa)

Predicted Functional Partners:

OEJ75641.1

0.890

OEJ77171.1

0.788

OEJ75400.1

0.771

OEJ72485.1

0.723

OEJ77273.1

0.693

anmK

0.688

OEJ73960.1

0.687

OEJ77221.1

0.670

OEJ74835.1

0.661

OEJ73285.1

0.622

Your Current Organism:

Desertifilum sp. IPPASB1220

NCBI taxonomy Id: 1781255
Other names: D. sp. IPPAS B-1220, Desertifilum sp. IPPAS B-1220

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OEJ72485.1	OEJ73285.1	BH720_24745	BH720_20615	Serine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LD-carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784
OEJ72485.1	OEJ75642.1	BH720_24745	BH720_08355	Serine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	KAP family P-loop domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.723
OEJ72485.1	anmK	BH720_24745	BH720_21940	Serine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	anhydro-N-acetylmuramic acid kinase; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family.	0.763
OEJ73285.1	OEJ72485.1	BH720_20615	BH720_24745	LD-carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784
OEJ73285.1	OEJ75642.1	BH720_20615	BH720_08355	LD-carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	KAP family P-loop domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.622
OEJ73960.1	OEJ74835.1	BH720_17055	BH720_12725	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.705
OEJ73960.1	OEJ75642.1	BH720_17055	BH720_08355	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.	KAP family P-loop domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.687
OEJ73960.1	OEJ77221.1	BH720_17055	BH720_00670	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.480
OEJ73960.1	OEJ77273.1	BH720_17055	BH720_00075	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.	PBS lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.754
OEJ74835.1	OEJ73960.1	BH720_12725	BH720_17055	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.705
OEJ74835.1	OEJ75642.1	BH720_12725	BH720_08355	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	KAP family P-loop domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.661
OEJ74835.1	OEJ77273.1	BH720_12725	BH720_00075	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	PBS lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
OEJ75400.1	OEJ75642.1	BH720_09805	BH720_08355	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	KAP family P-loop domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.771
OEJ75400.1	OEJ77171.1	BH720_09805	BH720_00400	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.	0.709
OEJ75641.1	OEJ75642.1	BH720_08350	BH720_08355	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	KAP family P-loop domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.890
OEJ75642.1	OEJ72485.1	BH720_08355	BH720_24745	KAP family P-loop domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.723
OEJ75642.1	OEJ73285.1	BH720_08355	BH720_20615	KAP family P-loop domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LD-carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.622
OEJ75642.1	OEJ73960.1	BH720_08355	BH720_17055	KAP family P-loop domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.687
OEJ75642.1	OEJ74835.1	BH720_08355	BH720_12725	KAP family P-loop domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.661
OEJ75642.1	OEJ75400.1	BH720_08355	BH720_09805	KAP family P-loop domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.771

page 1 of 2

Network Stats

number of nodes:

11

number of edges:

18

average node degree:

3.27

avg. local clustering coefficient:

0.895

expected number of edges:

11

PPI enrichment p-value:

0.0321

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0046653

Tetrahydrofolate metabolic process

4 of 17

1.81

1.65

0.00034

GO:0006575

Cellular modified amino acid metabolic process

6 of 80

1.32

1.29

0.00022

GO:0006807

Nitrogen compound metabolic process

11 of 1119

0.43

0.34

0.0045

GO:1901564

Organonitrogen compound metabolic process

9 of 792

0.5

0.32

0.0399

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0008115

Sarcosine oxidase activity

4 of 12

1.96

1.94

0.00011

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:2311

Ammonia ligase activity, and FAD binding domain

4 of 5

2.34

2.64

8.13e-06

CL:2145

Sarcosine oxidase activity, and FAD dependent oxidoreductase

4 of 23

1.68

1.6

0.00027

CL:2175

Sarcosine oxidase activity, and D-alanine catabolic process

2 of 6

1.96

0.88

0.0211

CL:2151

Sarcosine oxidase activity

2 of 7

1.9

0.84

0.0248

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

ptp00910

Nitrogen metabolism

2 of 8

1.84

0.84

0.0234

ptp00330

Arginine and proline metabolism

3 of 33

1.4

0.75

0.0234

ptp01100

Metabolic pathways

9 of 802

0.49

0.33

0.0234

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0560

Oxidoreductase

7 of 317

0.78

0.56

0.0071

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF13510

2Fe-2S iron-sulfur cluster binding domain

4 of 5

2.34

2.72

5.53e-06

PF08669

Glycine cleavage T-protein C-terminal barrel domain

4 of 15

1.87

1.93

8.35e-05

PF01571

Aminomethyltransferase folate-binding domain

4 of 15

1.87

1.93

8.35e-05

PF00117

Glutamine amidotransferase class-I

2 of 5

2.04

0.82

0.0296

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM01230

Glutamine synthetase, catalytic domain

2 of 6

1.96

0.79

0.0322

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