OEJ73541.1 protein (Desertifilum sp. IPPASB1220)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OEJ73541.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (130 aa)

Predicted Functional Partners:

OEJ73623.1

0.770

OEJ73366.1

0.752

OEJ75987.1

0.747

OEJ74571.1

0.747

OEJ73476.1

0.746

OEJ74689.1

0.744

OEJ76147.1

0.737

OEJ72961.1

0.737

OEJ73738.1

0.721

OEJ75774.1

0.716

Your Current Organism:

Desertifilum sp. IPPASB1220

NCBI taxonomy Id: 1781255
Other names: D. sp. IPPAS B-1220, Desertifilum sp. IPPAS B-1220

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OEJ72961.1	OEJ73366.1	BH720_22330	BH720_20320	RNA-binding protein hfq; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.719
OEJ72961.1	OEJ73541.1	BH720_22330	BH720_19225	RNA-binding protein hfq; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.737
OEJ72961.1	OEJ73623.1	BH720_22330	BH720_18900	RNA-binding protein hfq; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.718
OEJ72961.1	OEJ74689.1	BH720_22330	BH720_13500	RNA-binding protein hfq; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.708
OEJ72961.1	OEJ75987.1	BH720_22330	BH720_06835	RNA-binding protein hfq; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.668
OEJ72961.1	OEJ76147.1	BH720_22330	BH720_06225	RNA-binding protein hfq; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.741
OEJ73366.1	OEJ72961.1	BH720_20320	BH720_22330	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA-binding protein hfq; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.719
OEJ73366.1	OEJ73476.1	BH720_20320	BH720_19810	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.755
OEJ73366.1	OEJ73541.1	BH720_20320	BH720_19225	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.752
OEJ73366.1	OEJ73623.1	BH720_20320	BH720_18900	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.715
OEJ73366.1	OEJ74571.1	BH720_20320	BH720_13935	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.580
OEJ73366.1	OEJ74689.1	BH720_20320	BH720_13500	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.762
OEJ73366.1	OEJ75774.1	BH720_20320	BH720_07525	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.597
OEJ73366.1	OEJ75987.1	BH720_20320	BH720_06835	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.601
OEJ73366.1	OEJ76147.1	BH720_20320	BH720_06225	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.734
OEJ73476.1	OEJ73366.1	BH720_19810	BH720_20320	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.755
OEJ73476.1	OEJ73541.1	BH720_19810	BH720_19225	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.746
OEJ73476.1	OEJ73623.1	BH720_19810	BH720_18900	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.753
OEJ73476.1	OEJ74571.1	BH720_19810	BH720_13935	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.737
OEJ73476.1	OEJ75774.1	BH720_19810	BH720_07525	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.472

page 1 of 4

Network Stats

number of nodes:

11

number of edges:

46

average node degree:

8.36

avg. local clustering coefficient:

0.982

expected number of edges:

24

PPI enrichment p-value:

5.63e-05

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006412

Translation

9 of 109

1.44

2.4

1.70e-09

GO:0044249

Cellular biosynthetic process

10 of 634

0.72

0.67

2.23e-05

GO:1901576

Organic substance biosynthetic process

10 of 655

0.71

0.65

2.85e-05

GO:0044238

Primary metabolic process

11 of 1231

0.48

0.4

0.00048

GO:0071704

Organic substance metabolic process

11 of 1519

0.38

0.32

0.0038

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0019843

rRNA binding

9 of 45

1.83

4.27

5.90e-13

GO:0003735

Structural constituent of ribosome

9 of 57

1.72

3.78

2.04e-12

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005840

Ribosome

9 of 61

1.69

3.72

1.11e-12

GO:0015935

Small ribosomal subunit

3 of 10

2.0

1.97

0.00010

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:195

rRNA-binding

6 of 9

2.35

4.97

5.83e-11

CL:162

rRNA-binding

8 of 28

1.98

4.56

4.61e-12

CL:156

Structural constituent of ribosome

9 of 62

1.69

3.59

4.61e-12

CL:1841

Mixed, incl. Fatty acyl-CoA reductase, and Steroid metabolic process

2 of 7

1.98

0.98

0.0136

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map03010

Ribosome

9 of 60

1.7

3.75

1.04e-12

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0015935

Small ribosomal subunit

6 of 16

2.1

3.93

2.42e-09

GOCC:0022627

Cytosolic small ribosomal subunit

5 of 15

2.05

3.35

5.14e-08

GOCC:0043229

Intracellular organelle

10 of 323

1.02

1.25

2.07e-08

GOCC:0005622

Intracellular

11 of 1297

0.45

0.39

0.00024

GOCC:0005737

Cytoplasm

8 of 918

0.47

0.32

0.0230

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0699

rRNA-binding

9 of 42

1.86

4.55

9.99e-14

KW-0689

Ribosomal protein

9 of 59

1.71

3.8

8.02e-13

KW-0820

tRNA-binding

2 of 15

1.65

0.68

0.0458

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

Server load: low (16%) [HD]

Permalink

Network

Cooccurrence

Databases

Neighborhood

Textmining

Fusion

Experiments

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About