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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ORB75896.12-nitropropane dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (313 aa)    
Predicted Functional Partners:
ORB76138.1
3-oxoacyl-ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.968
ORB75895.1
LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.897
ORB76051.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.887
ORB74229.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.887
ORB74237.1
Respiratory nitrate reductase subunit gamma; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.881
ORB74239.1
Nitrate reductase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.879
ORB75258.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.873
ORB75259.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.873
ORB75022.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.870
ORB75892.1
Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
       0.841
Your Current Organism:
Mycobacterium scrofulaceum
NCBI taxonomy Id: 1783
Other names: ATCC 19981, CCUG 29045, CIP 105416, DSM 43992, JCM 6381, M. scrofulaceum, NCTC 10803
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