ORB75460.1 protein (Mycobacterium scrofulaceum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Mycobacterium scrofulaceum

NCBI taxonomy Id: 1783
Other names: ATCC 19981, CCUG 29045, CIP 105416, DSM 43992, JCM 6381, M. scrofulaceum, NCTC 10803

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ORB73380.1	ORB73615.1	BST44_14735	BST44_13840	DUF3298 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.829
ORB73380.1	ORB74229.1	BST44_14735	BST44_10175	DUF3298 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.720
ORB73380.1	ORB75459.1	BST44_14735	BST44_04860	DUF3298 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.746
ORB73380.1	ORB75460.1	BST44_14735	BST44_04865	DUF3298 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.746
ORB73380.1	ORB76051.1	BST44_14735	BST44_00445	DUF3298 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.720
ORB73380.1	ndk	BST44_14735	BST44_00605	DUF3298 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.	0.794
ORB73448.1	ORB73615.1	BST44_14095	BST44_13840	Adenylate/guanylate cyclase domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.853
ORB73448.1	ORB74229.1	BST44_14095	BST44_10175	Adenylate/guanylate cyclase domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.853
ORB73448.1	ORB75459.1	BST44_14095	BST44_04860	Adenylate/guanylate cyclase domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.643
ORB73448.1	ORB75460.1	BST44_14095	BST44_04865	Adenylate/guanylate cyclase domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.713
ORB73448.1	ORB76051.1	BST44_14095	BST44_00445	Adenylate/guanylate cyclase domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.853
ORB73615.1	ORB73380.1	BST44_13840	BST44_14735	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DUF3298 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.829
ORB73615.1	ORB73448.1	BST44_13840	BST44_14095	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Adenylate/guanylate cyclase domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.853
ORB73615.1	ORB74229.1	BST44_13840	BST44_10175	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ORB73615.1	ORB75459.1	BST44_13840	BST44_04860	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.803
ORB73615.1	ORB75460.1	BST44_13840	BST44_04865	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.803
ORB73615.1	ORB76051.1	BST44_13840	BST44_00445	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ORB74229.1	ORB73380.1	BST44_10175	BST44_14735	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DUF3298 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.720
ORB74229.1	ORB73448.1	BST44_10175	BST44_14095	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Adenylate/guanylate cyclase domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.853
ORB74229.1	ORB73615.1	BST44_10175	BST44_13840	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999