ORB75488.1 protein (Mycobacterium scrofulaceum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Mycobacterium scrofulaceum

NCBI taxonomy Id: 1783
Other names: ATCC 19981, CCUG 29045, CIP 105416, DSM 43992, JCM 6381, M. scrofulaceum, NCTC 10803

Export your current network:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BST44_03290	ORB75488.1	BST44_03290	BST44_05035	3-hydroxy-2-methylbutyryl-CoA dehydrogenase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.789
ORB68177.1	ORB75488.1	BST44_26900	BST44_05035	DitF protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.779
ORB68267.1	ORB75488.1	BST44_26755	BST44_05035	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.710
ORB68267.1	ORB75489.1	BST44_26755	BST44_05040	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family.	0.700
ORB68267.1	ORB75579.1	BST44_26755	BST44_03510	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family.	0.735
ORB68360.1	ORB75488.1	BST44_26500	BST44_05035	Lipid-transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.815
ORB73353.1	ORB75488.1	BST44_14570	BST44_05035	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.756
ORB75432.1	ORB75488.1	BST44_04695	BST44_05035	3-ketoacyl-CoA thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.797
ORB75488.1	BST44_03290	BST44_05035	BST44_03290	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxy-2-methylbutyryl-CoA dehydrogenase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.789
ORB75488.1	ORB68177.1	BST44_05035	BST44_26900	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DitF protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.779
ORB75488.1	ORB68267.1	BST44_05035	BST44_26755	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.710
ORB75488.1	ORB68360.1	BST44_05035	BST44_26500	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipid-transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.815
ORB75488.1	ORB73353.1	BST44_05035	BST44_14570	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.756
ORB75488.1	ORB75432.1	BST44_05035	BST44_04695	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-ketoacyl-CoA thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.797
ORB75488.1	ORB75489.1	BST44_05035	BST44_05040	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family.	0.958
ORB75488.1	ORB75579.1	BST44_05035	BST44_03510	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family.	0.731
ORB75488.1	ORB75595.1	BST44_05035	BST44_03590	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family.	0.861
ORB75488.1	ORB75710.1	BST44_05035	BST44_03655	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DitF protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.788
ORB75489.1	ORB68267.1	BST44_05040	BST44_26755	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.700
ORB75489.1	ORB75488.1	BST44_05040	BST44_05035	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.958