ORB75286.1 protein (Mycobacterium scrofulaceum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Mycobacterium scrofulaceum

NCBI taxonomy Id: 1783
Other names: ATCC 19981, CCUG 29045, CIP 105416, DSM 43992, JCM 6381, M. scrofulaceum, NCTC 10803

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ORB75281.1	ORB75282.1	BST44_05420	BST44_05425	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
ORB75281.1	ORB75283.1	BST44_05420	BST44_05430	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.930
ORB75281.1	ORB75284.1	BST44_05420	BST44_05435	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	16S/23S rRNA (cytidine-2'-O)-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.871
ORB75281.1	ORB75286.1	BST44_05420	BST44_05445	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.	0.909
ORB75281.1	ORB75288.1	BST44_05420	BST44_05455	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Channel-forming protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.528
ORB75281.1	nadK	BST44_05420	BST44_05440	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.	0.935
ORB75282.1	ORB75281.1	BST44_05425	BST44_05420	HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
ORB75282.1	ORB75283.1	BST44_05425	BST44_05430	HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.930
ORB75282.1	ORB75284.1	BST44_05425	BST44_05435	HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	16S/23S rRNA (cytidine-2'-O)-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.870
ORB75282.1	ORB75286.1	BST44_05425	BST44_05445	HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.	0.909
ORB75282.1	ORB75288.1	BST44_05425	BST44_05455	HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Channel-forming protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.528
ORB75282.1	nadK	BST44_05425	BST44_05440	HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.	0.925
ORB75283.1	ORB75281.1	BST44_05430	BST44_05420	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.930
ORB75283.1	ORB75282.1	BST44_05430	BST44_05425	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.930
ORB75283.1	ORB75284.1	BST44_05430	BST44_05435	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	16S/23S rRNA (cytidine-2'-O)-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.883
ORB75283.1	ORB75286.1	BST44_05430	BST44_05445	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.	0.918
ORB75283.1	ORB75288.1	BST44_05430	BST44_05455	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Channel-forming protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.537
ORB75283.1	nadK	BST44_05430	BST44_05440	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.	0.933
ORB75284.1	ORB75281.1	BST44_05435	BST44_05420	16S/23S rRNA (cytidine-2'-O)-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.871
ORB75284.1	ORB75282.1	BST44_05435	BST44_05425	16S/23S rRNA (cytidine-2'-O)-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.870