ORB75125.1 protein (Mycobacterium scrofulaceum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Mycobacterium scrofulaceum

NCBI taxonomy Id: 1783
Other names: ATCC 19981, CCUG 29045, CIP 105416, DSM 43992, JCM 6381, M. scrofulaceum, NCTC 10803

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ORB65847.1	ORB68274.1	BST44_28345	BST44_26605	Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.624
ORB65847.1	ORB71442.1	BST44_28345	BST44_21355	Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ketosteroid isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.404
ORB65847.1	ORB75125.1	BST44_28345	BST44_05965	Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diacylglycerol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.615
ORB65847.1	dapA	BST44_28345	BST44_02115	Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).	0.873
ORB65847.1	dapD	BST44_28345	BST44_22545	Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA.	0.863
ORB68274.1	ORB65847.1	BST44_26605	BST44_28345	Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.624
ORB68274.1	ORB71442.1	BST44_26605	BST44_21355	Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ketosteroid isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.465
ORB68274.1	ORB72873.1	BST44_26605	BST44_17300	Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bile acid 7-alpha dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.477
ORB68274.1	ORB74942.1	BST44_26605	BST44_06515	Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.597
ORB68274.1	ORB75125.1	BST44_26605	BST44_05965	Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diacylglycerol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.590
ORB68274.1	ORB76053.1	BST44_26605	BST44_00465	Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.613
ORB68274.1	dapA	BST44_26605	BST44_02115	Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).	0.863
ORB68274.1	dapD	BST44_26605	BST44_22545	Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA.	0.863
ORB71442.1	ORB65847.1	BST44_21355	BST44_28345	Ketosteroid isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.404
ORB71442.1	ORB68274.1	BST44_21355	BST44_26605	Ketosteroid isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.465
ORB71442.1	ORB71688.1	BST44_21355	BST44_20850	Ketosteroid isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.504
ORB71442.1	ORB72873.1	BST44_21355	BST44_17300	Ketosteroid isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bile acid 7-alpha dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.690
ORB71442.1	ORB74942.1	BST44_21355	BST44_06515	Ketosteroid isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.416
ORB71442.1	ORB75125.1	BST44_21355	BST44_05965	Ketosteroid isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diacylglycerol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.618
ORB71688.1	ORB71442.1	BST44_20850	BST44_21355	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ketosteroid isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.504