Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ORB74378.1Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (349 aa)    
Predicted Functional Partners:
ORB74377.1
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.628
ORB74379.1
Band 7 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.625
ORB72141.1
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.615
ORB73673.1
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.481
ORB70697.1
Nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.480
ORB74462.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.476
ORB74376.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.446
ORB74380.1
Flavodoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.408
Your Current Organism:
Mycobacterium scrofulaceum
NCBI taxonomy Id: 1783
Other names: ATCC 19981, CCUG 29045, CIP 105416, DSM 43992, JCM 6381, M. scrofulaceum, NCTC 10803
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