ORB73817.1 protein (Mycobacterium scrofulaceum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Mycobacterium scrofulaceum

NCBI taxonomy Id: 1783
Other names: ATCC 19981, CCUG 29045, CIP 105416, DSM 43992, JCM 6381, M. scrofulaceum, NCTC 10803

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ORB67404.1	ORB67405.1	BST44_27280	BST44_27290	Type VII secretion-associated serine protease mycosin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family.	Type VII secretion protein EccC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.970
ORB67404.1	ORB67406.1	BST44_27280	BST44_27295	Type VII secretion-associated serine protease mycosin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family.	Type VII secretion-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.929
ORB67404.1	ORB73817.1	BST44_27280	BST44_12935	Type VII secretion-associated serine protease mycosin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family.	Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.652
ORB67405.1	ORB67404.1	BST44_27290	BST44_27280	Type VII secretion protein EccC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VII secretion-associated serine protease mycosin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family.	0.970
ORB67405.1	ORB67406.1	BST44_27290	BST44_27295	Type VII secretion protein EccC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VII secretion-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
ORB67405.1	ORB73817.1	BST44_27290	BST44_12935	Type VII secretion protein EccC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.758
ORB67406.1	ORB67404.1	BST44_27295	BST44_27280	Type VII secretion-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VII secretion-associated serine protease mycosin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family.	0.929
ORB67406.1	ORB67405.1	BST44_27295	BST44_27290	Type VII secretion-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VII secretion protein EccC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
ORB67406.1	ORB73817.1	BST44_27295	BST44_12935	Type VII secretion-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.681
ORB67406.1	rpsB	BST44_27295	BST44_12930	Type VII secretion-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS2 family.	0.762
ORB73167.1	ORB73817.1	BST44_15555	BST44_12935	Molybdopterin-guanine dinucleotide biosynthesis protein MobA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.447
ORB73814.1	ORB73817.1	BST44_12920	BST44_12935	Amidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the amidase family.	Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.680
ORB73814.1	rpsB	BST44_12920	BST44_12930	Amidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the amidase family.	30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS2 family.	0.842
ORB73814.1	tsf	BST44_12920	BST44_12925	Amidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the amidase family.	Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	0.851
ORB73817.1	ORB67404.1	BST44_12935	BST44_27280	Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VII secretion-associated serine protease mycosin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family.	0.652
ORB73817.1	ORB67405.1	BST44_12935	BST44_27290	Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VII secretion protein EccC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.758
ORB73817.1	ORB67406.1	BST44_12935	BST44_27295	Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VII secretion-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.681
ORB73817.1	ORB73167.1	BST44_12935	BST44_15555	Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdopterin-guanine dinucleotide biosynthesis protein MobA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.447
ORB73817.1	ORB73814.1	BST44_12935	BST44_12920	Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the amidase family.	0.680
ORB73817.1	ORB73828.1	BST44_12935	BST44_12990	Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.500