ORB73823.1 protein (Mycobacterium scrofulaceum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Mycobacterium scrofulaceum

NCBI taxonomy Id: 1783
Other names: ATCC 19981, CCUG 29045, CIP 105416, DSM 43992, JCM 6381, M. scrofulaceum, NCTC 10803

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ORB69080.1	ORB73821.1	BST44_26260	BST44_12955	Phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA protecting protein DprA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.789
ORB69080.1	ORB73823.1	BST44_26260	BST44_12965	Phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.556
ORB69080.1	ORB75806.1	BST44_26260	BST44_02460	Phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.	0.791
ORB69080.1	ORB76046.1	BST44_26260	BST44_00420	Phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.711
ORB72931.1	ORB73823.1	BST44_16850	BST44_12965	DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.549
ORB72931.1	ruvC	BST44_16850	BST44_03150	DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.	0.441
ORB73821.1	ORB69080.1	BST44_12955	BST44_26260	DNA protecting protein DprA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.789
ORB73821.1	ORB73823.1	BST44_12955	BST44_12965	DNA protecting protein DprA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.883
ORB73821.1	ORB73824.1	BST44_12955	BST44_12970	DNA protecting protein DprA; Derived by automated computational analysis using gene prediction method: Protein Homology.	YraN family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0102 family.	0.701
ORB73821.1	ORB76046.1	BST44_12955	BST44_00420	DNA protecting protein DprA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.717
ORB73823.1	ORB69080.1	BST44_12965	BST44_26260	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.556
ORB73823.1	ORB72931.1	BST44_12965	BST44_16850	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.549
ORB73823.1	ORB73821.1	BST44_12965	BST44_12955	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA protecting protein DprA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.883
ORB73823.1	ORB73824.1	BST44_12965	BST44_12970	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	YraN family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0102 family.	0.951
ORB73823.1	ORB75806.1	BST44_12965	BST44_02460	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.	0.572
ORB73823.1	ORB76046.1	BST44_12965	BST44_00420	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
ORB73823.1	def	BST44_12965	BST44_11875	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	0.516
ORB73823.1	fdhD	BST44_12965	BST44_12975	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sufurtransferase FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.	0.731
ORB73823.1	ruvC	BST44_12965	BST44_03150	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.	0.745
ORB73823.1	secD	BST44_12965	BST44_28335	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.	0.499