ORB73057.1 protein (Mycobacterium scrofulaceum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Mycobacterium scrofulaceum

NCBI taxonomy Id: 1783
Other names: ATCC 19981, CCUG 29045, CIP 105416, DSM 43992, JCM 6381, M. scrofulaceum, NCTC 10803

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ORB66594.1	ORB73057.1	BST44_27880	BST44_16655	Glutamate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.651
ORB66594.1	apt	BST44_27880	BST44_28320	Glutamate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.	0.637
ORB69776.1	ORB73057.1	BST44_24955	BST44_16655	SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.653
ORB69776.1	ORB73975.1	BST44_24955	BST44_11415	SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD(+)--arginine ADP-ribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.728
ORB73057.1	ORB66594.1	BST44_16655	BST44_27880	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.651
ORB73057.1	ORB69776.1	BST44_16655	BST44_24955	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.653
ORB73057.1	ORB73148.1	BST44_16655	BST44_16225	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nucleoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.642
ORB73057.1	ORB73975.1	BST44_16655	BST44_11415	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD(+)--arginine ADP-ribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.702
ORB73057.1	add	BST44_16655	BST44_22260	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Adenosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family. Adenosine deaminase subfamily.	0.648
ORB73057.1	ahcY	BST44_16655	BST44_26235	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.	0.667
ORB73057.1	apt	BST44_16655	BST44_28320	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.	0.725
ORB73057.1	fbiC	BST44_16655	BST44_10200	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase; catalyzes radical-mediated transfer of hydroxybenzyl group from 4-hydroxyphenylpyruvate (HPP) to 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione to form 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO); functions in F420 biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.679
ORB73057.1	rlmN	BST44_16655	BST44_12830	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.	0.653
ORB73057.1	speE	BST44_16655	BST44_03125	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.	0.666
ORB73148.1	ORB73057.1	BST44_16225	BST44_16655	Nucleoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.642
ORB73148.1	add	BST44_16225	BST44_22260	Nucleoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Adenosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family. Adenosine deaminase subfamily.	0.856
ORB73148.1	apt	BST44_16225	BST44_28320	Nucleoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.	0.901
ORB73975.1	ORB69776.1	BST44_11415	BST44_24955	NAD(+)--arginine ADP-ribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.728
ORB73975.1	ORB73057.1	BST44_11415	BST44_16655	NAD(+)--arginine ADP-ribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.702
add	ORB73057.1	BST44_22260	BST44_16655	Adenosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family. Adenosine deaminase subfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.648