ORB72511.1 protein (Mycobacterium scrofulaceum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Mycobacterium scrofulaceum

NCBI taxonomy Id: 1783
Other names: ATCC 19981, CCUG 29045, CIP 105416, DSM 43992, JCM 6381, M. scrofulaceum, NCTC 10803

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ORB71714.1	ORB72505.1	BST44_21000	BST44_19180	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.415
ORB71714.1	ORB72506.1	BST44_21000	BST44_19185	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.415
ORB71714.1	ORB72508.1	BST44_21000	BST44_19195	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.444
ORB71714.1	ORB72511.1	BST44_21000	BST44_19210	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA acetyltransferase; Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family.	0.865
ORB71714.1	ORB72514.1	BST44_21000	BST44_19225	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.474
ORB71714.1	ORB72515.1	BST44_21000	BST44_19230	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyl CoA--acetate/3-ketoacid CoA transferase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
ORB71714.1	ORB73350.1	BST44_21000	BST44_14555	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxy-2-methylbutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.874
ORB71714.1	ORB74079.1	BST44_21000	BST44_11635	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxybutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.852
ORB71714.1	ORB75482.1	BST44_21000	BST44_05005	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.854
ORB72505.1	ORB71714.1	BST44_19180	BST44_21000	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.415
ORB72505.1	ORB72506.1	BST44_19180	BST44_19185	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
ORB72505.1	ORB72508.1	BST44_19180	BST44_19195	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
ORB72505.1	ORB72509.1	BST44_19180	BST44_19200	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.932
ORB72505.1	ORB72511.1	BST44_19180	BST44_19210	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA acetyltransferase; Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family.	0.946
ORB72505.1	ORB72514.1	BST44_19180	BST44_19225	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.733
ORB72505.1	ORB72515.1	BST44_19180	BST44_19230	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyl CoA--acetate/3-ketoacid CoA transferase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.797
ORB72505.1	ORB74079.1	BST44_19180	BST44_11635	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxybutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
ORB72505.1	ORB75482.1	BST44_19180	BST44_05005	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.771
ORB72506.1	ORB71714.1	BST44_19185	BST44_21000	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.415
ORB72506.1	ORB72505.1	BST44_19185	BST44_19180	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998