ORB70166.1 protein (Mycobacterium scrofulaceum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Mycobacterium scrofulaceum

NCBI taxonomy Id: 1783
Other names: ATCC 19981, CCUG 29045, CIP 105416, DSM 43992, JCM 6381, M. scrofulaceum, NCTC 10803

Export your current network:

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file format is 'PNG': portable network graphic

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ORB67259.1	ORB69063.1	BST44_27645	BST44_26160	Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Coenzyme F420-0:L-glutamate ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.826
ORB67259.1	ORB70166.1	BST44_27645	BST44_23985	Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.739
ORB67259.1	ORB71684.1	BST44_27645	BST44_20830	Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.453
ORB67259.1	ORB72649.1	BST44_27645	BST44_18370	Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.682
ORB67259.1	ORB75365.1	BST44_27645	BST44_04325	Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.593
ORB67259.1	ORB75436.1	BST44_27645	BST44_04715	Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.834
ORB67259.1	fbiA	BST44_27645	BST44_26165	Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-phospho-L-lactate transferase; Catalyzes the transfer of the phosphoenolpyruvate moiety from enoylpyruvoyl-2-diphospho-5'-guanosine (EPPG) to 7,8-didemethyl-8- hydroxy-5-deazariboflavin (FO) with the formation of dehydro coenzyme F420-0 and GMP.	0.720
ORB68056.1	ORB69063.1	BST44_27175	BST44_26160	Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Coenzyme F420-0:L-glutamate ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.822
ORB68056.1	ORB70166.1	BST44_27175	BST44_23985	Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.740
ORB68056.1	ORB71684.1	BST44_27175	BST44_20830	Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.467
ORB68056.1	ORB72649.1	BST44_27175	BST44_18370	Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.671
ORB68056.1	ORB75365.1	BST44_27175	BST44_04325	Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.656
ORB68056.1	ORB75436.1	BST44_27175	BST44_04715	Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.708
ORB68056.1	fbiA	BST44_27175	BST44_26165	Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-phospho-L-lactate transferase; Catalyzes the transfer of the phosphoenolpyruvate moiety from enoylpyruvoyl-2-diphospho-5'-guanosine (EPPG) to 7,8-didemethyl-8- hydroxy-5-deazariboflavin (FO) with the formation of dehydro coenzyme F420-0 and GMP.	0.707
ORB69063.1	ORB67259.1	BST44_26160	BST44_27645	Coenzyme F420-0:L-glutamate ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.826
ORB69063.1	ORB68056.1	BST44_26160	BST44_27175	Coenzyme F420-0:L-glutamate ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.822
ORB69063.1	ORB70166.1	BST44_26160	BST44_23985	Coenzyme F420-0:L-glutamate ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.762
ORB69063.1	ORB71684.1	BST44_26160	BST44_20830	Coenzyme F420-0:L-glutamate ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.636
ORB69063.1	ORB72582.1	BST44_26160	BST44_18815	Coenzyme F420-0:L-glutamate ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.831
ORB69063.1	ORB72649.1	BST44_26160	BST44_18370	Coenzyme F420-0:L-glutamate ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.725