Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PAE0165Conserved hypothetical protein. (114 aa)    
Predicted Functional Partners:
PAE0166
paREP11.
   
 
 0.829
PAE0164a
Hypothetical protein.
       0.762
PAE2506
paREP11.
  
  
  0.672
PAE2546
paREP11.
 
 
 
 0.614
PAE1153
Conserved hypothetical protein.
 
 
 
 0.570
PAE1894
Conserved hypothetical protein.
 
     0.514
PAE1902
Conserved hypothetical protein.
 
     0.502
PAE0273
Conserved hypothetical protein.
 
     0.491
PAE0153
Hypothetical protein.
 
     0.475
PAE1155
Conserved hypothetical protein.
 
     0.469
Your Current Organism:
Pyrobaculum aerophilum
NCBI taxonomy Id: 178306
Other names: P. aerophilum str. IM2, Pyrobaculum aerophilum IM2, Pyrobaculum aerophilum str. IM2, Pyrobaculum aerophilum strain IM2
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