STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PAE0467Glycosyltransferase (type 1); Cell envelope; Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides. (112 aa)    
Predicted Functional Partners:
PAE3422
Conserved hypothetical protein.
 
 
 0.667
PAE2544
Conserved hypothetical protein.
  
 0.506
PAE0468
Hypothetical protein.
       0.504
PAE2993
DNA topoisomerase (topA); DNA metabolism; DNA replication, recombination, and repair.
 
 
 
 0.468
PAE1735
Conserved hypothetical protein.
   
 0.430
PAE2004
Serine/threonine specific protein phosphatase; Regulatory functions; General.
   
 
 0.429
PAE1982
Aerolysin, part 1, authentic frameshift; Protein fate; Degradation of proteins, peptides, and glycopeptides.
 
  
 0.428
Your Current Organism:
Pyrobaculum aerophilum
NCBI taxonomy Id: 178306
Other names: P. aerophilum str. IM2, Pyrobaculum aerophilum IM2, Pyrobaculum aerophilum str. IM2, Pyrobaculum aerophilum strain IM2
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.