STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PAE0540Glycosyltransferase (type 1); Cell envelope; Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides. (402 aa)    
Predicted Functional Partners:
PAE0542
Glycosyltransferase (type 1); Cell envelope; Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides.
 
     0.815
PAE0541
Glycosyltransferase (type 1); Cell envelope; Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides.
 
     0.805
PAE0539
Hypothetical protein.
       0.561
PAE3422
Conserved hypothetical protein.
  
 
 0.544
PAE1922
UDP-glucose 4-epimerase (galE-1); Cell envelope; Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides.
 
  
 0.500
PAE2004
Serine/threonine specific protein phosphatase; Regulatory functions; General.
 
 
 
 0.496
PAE3631
NAD dependent epimerase/dehydratase, putative; Purines, pyrimidines, nucleosides, and nucleotides; Sugar-nucleotide biosynthesis and conversions.
 
  
 0.474
PAE1290
Conserved within P. aerophilum part 2, authentic frameshift; Hypothetical; Conserved within genome.
 
    0.468
PAE0815
Serine/threonine protein kinase, putative; Regulatory functions; General.
 
 
 0.460
PAE0712
Surface layer-associated STABLE protease, conjectural; Protein fate; Degradation of proteins, peptides, and glycopeptides; Belongs to the peptidase S8 family.
 
  
 0.449
Your Current Organism:
Pyrobaculum aerophilum
NCBI taxonomy Id: 178306
Other names: P. aerophilum str. IM2, Pyrobaculum aerophilum IM2, Pyrobaculum aerophilum str. IM2, Pyrobaculum aerophilum strain IM2
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